Computational systems biology / edited by Jason McDermott [and others].

Bibliographic Details
Other Authors: McDermott, Jason
Language:English
Published: Totowa, N.J. : Humana, [2009], ©2009.
Series:Methods in molecular biology (Clifton, N.J.) ; v. 541.
Springer protocols (Series)
Subjects:
Physical Description:xviii, 587 pages, 5 unnumbered pages of plates : illustrations (some color) ; 27 cm.
Format: Book

MARC

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245 0 0 |a Computational systems biology /  |c edited by Jason McDermott [and others]. 
260 |a Totowa, N.J. :  |b Humana,  |c [2009], ©2009. 
300 |a xviii, 587 pages, 5 unnumbered pages of plates :  |b illustrations (some color) ;  |c 27 cm. 
336 |a text  |b txt  |2 rdacontent 
337 |a unmediated  |b n  |2 rdamedia 
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490 1 |a Methods in molecular biology,  |x 1064-3745 ;  |v 541 
490 1 |a Springer protocols 
504 |a Includes bibliographical references and index. 
505 0 |a Part 1. Network components -- 1. Identification of cis-regulatory elements in gene co-expression networks using A-GLAM / Leonardo Mariño-Ramírez ... [et al.] -- 2. Structure-based Ab initio prediction of transcription factor-binding sites / L. Angela Liu and Joel S. Bader -- 3. Inferring protein-protein interactions from multiple protein domain combinations / Simon P. Kanaan ... [et al.] -- 4. Prediction of protein-protein interactions: a study of the co-evolution model / Itai Sharon, Jason V. Davis, and Golan Yona -- 5. Computational reconstruction of protein-protein interaction networks: algorithms and issues / Eric Franzosa, Bolan Linghu, and Yu Xia -- 6. Prediction and integration of regulatory and protein-protein interactions / Duangdao Wichadakul, Jason McDermott, and Ram Samudrala -- 7. Detecting hierarchical modularity in biological networks / Erzsebet Ravasz -- Part 2. Network inference -- 8. Methods to reconstruct and compare transcriptional regulatory networks / M. Madan Babu, Benjamin Lang, and L. Aravind -- 9. Learning global models of transcriptional regulatory networks from data / Aviv Madar and Richard Bonneau -- 10. Inferring molecular interactions pathways from eQTL data / Imran Rashid, Jason McDermott, and Ram Samudrala -- 11. Methods for the inference of biological pathways and networks / Roger E. Bumgarner and Ka Yee Yeung -- 
505 0 |a Part 3. Network dynamics -- 12. Exploring pathways from gene co-expression to network dynamics / Huai Li, Yu Sun, and Ming Zhan -- 13. Network dynamics / Herbert M. Sauro -- 14. Kinetic modeling of biological systems / Haluk Resat, Linda Petzold, and Michel F. Pettigrew -- 15. Guidance for data collection and computational modelling of regulatory networks / Adam Christopher Palmer, and Keith Edward Shearwin -- Part 4. Function and evolutionary systems biology -- 16. Maximum likelihood method for reconstruction of the evolution of eukaryotic gene structure / Liran Carmel, ... [et al.] -- 17. Enzyme function prediction with interpretable models / Umar Syed and Golan Yona -- 18. Using evolutionary information to find specificity-determining and co-evolving residues / Grigory Kolesov and Leonid A. Mirny -- 19. Connecting protein interaction data, mutations, and disease using bioinformatics / Jake Y. Chen, Eunseog Youn, and Sean D. Mooney -- 20. Effects of functional bias on supervised learning of a gene network model / Insuk Lee and Edward M. Marcotte -- Part 5. Computational infrastructure for systems biology -- 21. Comparing algorithms for clustering of expression data: how to assess gene clusters / Golan Yona, William Dirks, and Shafquat Rahman -- 22. Bioverse API and web application / Michal Guerquin ... [et al.] -- 23. Computational representation of biological systems / Zach Frazier ... [et al.] -- 24. Biological network inference and analysis using SEBINI and CABIN / Ronald Taylor and Mudita Singhal. 
650 0 |a Computational biology.  |0 http://id.loc.gov/authorities/subjects/sh2003008355 
650 0 |a Systems biology.  |0 http://id.loc.gov/authorities/subjects/sh2008002926 
650 0 |a Bioinformatics.  |0 http://id.loc.gov/authorities/subjects/sh00003585 
650 1 2 |a Computational Biology. 
650 2 2 |a Systems Biology. 
700 1 |a McDermott, Jason.  |0 http://id.loc.gov/authorities/names/n2009181705 
830 0 |a Methods in molecular biology (Clifton, N.J.) ;  |v v. 541.  |0 http://id.loc.gov/authorities/names/n92002874 
830 0 |a Springer protocols (Series)  |0 http://id.loc.gov/authorities/names/no2008180772 
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